Role of the distal hydrogen-bonding network in regulating oxygen affinity in the truncated hemoglobin III from Campylobacter jejuni

Biochemistry. 2011 May 17;50(19):3946-56. doi: 10.1021/bi101137n. Epub 2011 Apr 25.

Abstract

Oxygen affinity in heme-containing proteins is determined by a number of factors, such as the nature and conformation of the distal residues that stabilize the heme bound-oxygen via hydrogen-bonding interactions. The truncated hemoglobin III from Campylobacter jejuni (Ctb) contains three potential hydrogen-bond donors in the distal site: TyrB10, TrpG8, and HisE7. Previous studies suggested that Ctb exhibits an extremely slow oxygen dissociation rate due to an interlaced hydrogen-bonding network involving the three distal residues. Here we have studied the structural and kinetic properties of the G8(WF) mutant of Ctb and employed state-of-the-art computer simulation methods to investigate the properties of the O(2) adduct of the G8(WF) mutant, with respect to those of the wild-type protein and the previously studied E7(HL) and/or B10(YF) mutants. Our data indicate that the unique oxygen binding properties of Ctb are determined by the interplay of hydrogen-bonding interactions between the heme-bound ligand and the surrounding TyrB10, TrpG8, and HisE7 residues.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Campylobacter jejuni / chemistry*
  • Campylobacter jejuni / genetics
  • Glycine / genetics
  • Heme / chemistry
  • Heme / genetics
  • Histidine / chemistry
  • Histidine / genetics
  • Hydrogen Bonding
  • Ligands
  • Molecular Dynamics Simulation
  • Mutagenesis, Site-Directed
  • Oxygen / chemistry*
  • Oxygen / metabolism*
  • Protein Binding / genetics
  • Spectrum Analysis, Raman
  • Truncated Hemoglobins / chemistry*
  • Truncated Hemoglobins / genetics
  • Tryptophan / chemistry
  • Tryptophan / genetics
  • Tyrosine / chemistry
  • Tyrosine / genetics

Substances

  • Bacterial Proteins
  • Ligands
  • Truncated Hemoglobins
  • Tyrosine
  • Heme
  • Histidine
  • Tryptophan
  • Oxygen
  • Glycine