Strategy for statistical-mapping of potential regulatory regions in the human genome

J Mol Biol. 1990 Dec 5;216(3):485-90. doi: 10.1016/0022-2836(90)90372-S.

Abstract

We have explored the feasibility of using crude nuclear extracts and band-shift experiments, to select and clone short human DNA fragments that contain binding sites for sequence-specific nuclear proteins. We show that this strategy is feasible. It provides a means to systematically identify the recognition sequences of proteins found in nuclear extracts prepared from various tissues, in order to compile a protein-binding-sequence catalogue. A complete catalogue would provide the data needed for searching the "raw" human DNA sequences for occurrence of protein-binding sites and thus, to construct a statistical map of potential regulatory regions in the human genome.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Cell Extracts
  • Cell Nucleus
  • Chromosome Mapping / methods*
  • Cloning, Molecular
  • DNA, Viral
  • DNA-Binding Proteins / metabolism*
  • Genome, Human*
  • HeLa Cells
  • Humans
  • Molecular Sequence Data
  • Regulatory Sequences, Nucleic Acid / genetics*
  • Simian virus 40 / genetics

Substances

  • Cell Extracts
  • DNA, Viral
  • DNA-Binding Proteins