Structural arrangement of the decoding site of Escherichia coli ribosomes as revealed from the data on affinity labelling of ribosomes by analogs of mRNA--derivatives of oligoribonucleotides

Biochim Biophys Acta. 1990 Apr 6;1048(2-3):245-56. doi: 10.1016/0167-4781(90)90063-8.

Abstract

Using derivatives of oligoribonucleotides bearing an active group at the 5'- or 3'-end, the affinity modification of Escherichia coli ribosomes has been investigated in model complexes imitating various steps of initiation and elongation with a different extent of approximation to the real protein-synthesizing system. The protein environment of the ribosome decoding site is determined. The S3, S4, S9, L2, L7/L12 proteins belong to the 5'-region of the decoding site, and the S5, S7, S9, L1, L16 proteins to the 3'-region. In the process of translation the template moves along the external side of the 30 S subunit, from the L1 ridge to the L7/L12 stalk. The structural arrangement of the decoding site or its nearest environment depends on the functional state of ribosomes in the process of translation.

MeSH terms

  • Affinity Labels / metabolism
  • Carbon Radioisotopes
  • Escherichia coli / genetics
  • Escherichia coli / metabolism*
  • Escherichia coli / ultrastructure
  • Kinetics
  • Models, Structural
  • Oligoribonucleotides / chemical synthesis
  • Oligoribonucleotides / metabolism*
  • Protein Biosynthesis
  • RNA, Messenger / metabolism*
  • RNA, Transfer, Amino Acyl / metabolism
  • RNA, Transfer, Met*
  • RNA, Transfer, Phe / metabolism
  • Ribosomal Proteins / isolation & purification
  • Ribosomal Proteins / metabolism*
  • Ribosomes / metabolism
  • Ribosomes / ultrastructure*

Substances

  • Affinity Labels
  • Carbon Radioisotopes
  • Oligoribonucleotides
  • RNA, Messenger
  • RNA, Transfer, Amino Acyl
  • RNA, Transfer, Met
  • RNA, Transfer, Phe
  • Ribosomal Proteins
  • tRNA, formylmethionine-