PCR-based isolation and identification of full-length low-molecular-weight glutenin subunit genes in bread wheat (Triticum aestivum L.)

Theor Appl Genet. 2011 Dec;123(8):1293-305. doi: 10.1007/s00122-011-1667-8. Epub 2011 Aug 10.

Abstract

Low-molecular-weight glutenin subunits (LMW-GSs) are encoded by a multi-gene family and are essential for determining the quality of wheat flour products, such as bread and noodles. However, the exact role or contribution of individual LMW-GS genes to wheat quality remains unclear. This is, at least in part, due to the difficulty in characterizing complete sequences of all LMW-GS gene family members in bread wheat. To identify full-length LMW-GS genes, a polymerase chain reaction (PCR)-based method was established, consisting of newly designed conserved primers and the previously developed LMW-GS gene molecular marker system. Using the PCR-based method, 17 LMW-GS genes were identified and characterized in Xiaoyan 54, of which 12 contained full-length sequences. Sequence alignments showed that 13 LMW-GS genes were identical to those found in Xiaoyan 54 using the genomic DNA library screening, and the other four full-length LMW-GS genes were first isolated from Xiaoyan 54. In Chinese Spring, 16 unique LMW-GS genes were isolated, and 13 of them contained full-length coding sequences. Additionally, 16 and 17 LMW-GS genes in Dongnong 101 and Lvhan 328 (chosen from the micro-core collections of Chinese germplasm), respectively, were also identified. Sequence alignments revealed that at least 15 LMW-GS genes were common in the four wheat varieties, and allelic variants of each gene shared high sequence identities (>95%) but exhibited length polymorphism in repetitive regions. This study provides a PCR-based method for efficiently identifying LMW-GS genes in bread wheat, which will improve the characterization of complex members of the LMW-GS gene family and facilitate the understanding of their contributions to wheat quality.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Bread
  • China
  • Conserved Sequence / genetics
  • DNA Primers / genetics
  • Electrophoresis, Agar Gel
  • Genes, Plant / genetics*
  • Glutens / chemistry*
  • Glutens / genetics*
  • Molecular Sequence Data
  • Molecular Weight
  • Phylogeny
  • Polymerase Chain Reaction / methods*
  • Protein Subunits / chemistry*
  • Protein Subunits / genetics*
  • Reproducibility of Results
  • Sequence Alignment
  • Triticum / genetics*

Substances

  • DNA Primers
  • Protein Subunits
  • Glutens
  • glutenin

Associated data

  • GENBANK/JF271917
  • GENBANK/JF271918
  • GENBANK/JF271919
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