Repair of DNA Dewar photoproduct to (6-4) photoproduct in (6-4) photolyase

J Phys Chem B. 2011 Sep 22;115(37):10976-82. doi: 10.1021/jp204128k. Epub 2011 Aug 29.

Abstract

Dewar photoproduct (Dewar PP) is the valence isomer of (6-4) photoproduct ((6-4)PP) in photodamaged DNA. Compared to the extensive studied CPD photoproducts, the underlying repair mechanisms for the (6-4)PP, and especially for the Dewar PP, are not well-established to date. In this paper, the repair mechanism of DNA Dewar photoproduct T(dew)C in (6-4) photolyase was elucidated using hybrid density functional theory. Our results showed that, during the repair process, the T(dew)C has to isomerize to T(6-4)C photolesion first via direct C6'-N3' bond cleavage facilitated by electron injection. This isomerization mechanism is energetically much more efficient than other possible rearrangement pathways. The calculations provide a theoretical interpretation to recent experimental observations.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / metabolism*
  • DNA Adducts / chemistry*
  • DNA Repair*
  • Deoxyribodipyrimidine Photo-Lyase / metabolism*
  • Isomerism
  • Models, Theoretical

Substances

  • DNA Adducts
  • DNA
  • Deoxyribodipyrimidine Photo-Lyase