Microarray analyses of oral punch biopsies from acute myeloid leukemia (AML) patients treated with chemotherapy

Oral Surg Oral Med Oral Pathol Oral Radiol Endod. 2011 Oct;112(4):446-52. doi: 10.1016/j.tripleo.2011.05.009. Epub 2011 Sep 8.

Abstract

Objective: Understanding the pathogenesis of chemotherapy-induced oral mucositis (CIOM) is vital to develop therapies for this common, dose-limiting side effect of cancer treatment. We investigated molecular events in CIOM from buccal mucosa tissue collected before and 2 days after chemotherapy from patients with acute myeloid leukemia (AML) and healthy controls by microarray analysis.

Methods: Microarray analysis was performed using Human Genome U133 Plus 2.0 Array on buccal mucosa punch biopsies from patients with AML before (n = 4) or after chemotherapy (n = 4), and from healthy controls (n = 3). Following Robust Multichip Average (RMA) normalization, we applied Linear Models for Microarray data (LIMMA) and Significance Analysis of Microarrays (SAM) for data analysis using the TM4/TMeV v4.5.1 program.

Results: LIMMA and SAM identified genes potentially affected by the presence of AML, including homeodomain-interacting protein kinase 1 (HIPK1), mex-3 homolog D (MEX3D), and genes potentially affected by chemotherapy, including argininosuccinate synthase 1 (ASS1), notch homolog 1 (NOTCH1), zinc transporter ZIP6 (SLC39A6), and TP53-regulated inhibitor of apoptosis 1 (TRIAP1). The expression of 2 genes with potential biological significance in oral mucositis, ASS1 and SLC39A6 (alias LIV-1), was confirmed by quantitative real-time reverse transcriptase-polymerase chain reaction (qRT-PCR).

Conclusions: Our results suggest that AML-specific deregulated immune responses and inflammatory tissue damage to the oral mucosa caused by chemotherapy may not be overcome by the natural cellular repair processes and therefore contribute to CIOM.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Antineoplastic Agents / adverse effects*
  • Argininosuccinate Synthase / analysis
  • Argininosuccinate Synthase / drug effects
  • Autoantigens / analysis
  • Autoantigens / drug effects
  • Biopsy, Needle*
  • Carrier Proteins / analysis
  • Carrier Proteins / drug effects
  • Cation Transport Proteins / analysis
  • Cation Transport Proteins / drug effects
  • Female
  • Follow-Up Studies
  • Gene Expression Profiling
  • Genome, Human / genetics
  • Humans
  • Intracellular Signaling Peptides and Proteins / analysis
  • Intracellular Signaling Peptides and Proteins / drug effects
  • Leukemia, Myeloid, Acute / drug therapy*
  • Male
  • Membrane Proteins / analysis
  • Membrane Proteins / drug effects
  • Microarray Analysis / methods*
  • Middle Aged
  • Mouth Mucosa / drug effects*
  • Mouth Mucosa / pathology
  • Neoplasm Proteins / analysis
  • Neoplasm Proteins / drug effects
  • Protein Serine-Threonine Kinases / analysis
  • Protein Serine-Threonine Kinases / drug effects
  • RNA-Binding Proteins / analysis
  • RNA-Binding Proteins / drug effects
  • Receptor, Notch1 / analysis
  • Receptor, Notch1 / drug effects
  • Retinol-Binding Proteins, Cellular / analysis
  • Retinol-Binding Proteins, Cellular / drug effects
  • Ribonucleoproteins / analysis
  • Ribonucleoproteins / drug effects
  • SS-B Antigen
  • Stomatitis / chemically induced*
  • Stomatitis / genetics
  • Tumor Suppressor Protein p53 / analysis
  • Tumor Suppressor Protein p53 / drug effects
  • Zinc Fingers / drug effects
  • Zinc Fingers / genetics

Substances

  • AHNAK protein, human
  • Antineoplastic Agents
  • Autoantigens
  • Carrier Proteins
  • Cation Transport Proteins
  • Intracellular Signaling Peptides and Proteins
  • Membrane Proteins
  • NOTCH1 protein, human
  • Neoplasm Proteins
  • RBP1 protein, human
  • RNA-Binding Proteins
  • Receptor, Notch1
  • Retinol-Binding Proteins, Cellular
  • Ribonucleoproteins
  • SLC39A6 protein, human
  • TRIAP1 protein, human
  • Tumor Suppressor Protein p53
  • HIPK2 protein, human
  • HIPK1 protein, human
  • Protein Serine-Threonine Kinases
  • Argininosuccinate Synthase