Reversed binding of a small molecule ligand in homologous chemokine receptors - differential role of extracellular loop 2

Br J Pharmacol. 2012 May;166(1):258-75. doi: 10.1111/j.1476-5381.2011.01771.x.

Abstract

Background and purpose: The majority of small molecule compounds targeting chemokine receptors share a similar pharmacophore with a centrally located aliphatic positive charge and flanking aromatic moieties. Here we describe a novel piperidine-based compound with structural similarity to previously described CCR8-specific agonists, but containing a unique phenyl-tetrazol moiety which, in addition to activity at CCR8 was also active at CCR1.

Experimental approach: Single point mutations were introduced in CCR1 and CCR8, and their effect on small molecule ligand-induced receptor activation was examined through inositol trisphosphate (IP(3) ) accumulation. The molecular interaction profile of the agonist was verified by molecular modeling.

Key results: The chemokine receptor conserved glutamic acid in TM-VII served as a common anchor for the positively charged amine in the piperidine ring. However, whereas the phenyl-tetrazol group interacted with TyrIV:24 (Tyr(172) ) and TyrIII:09 (Tyr(114) ) in the major binding pocket (delimited by TM-III to VII) of CCR8, it also interacted with TrpII:20 (Trp(90) ) and LysII:24 (Lys(94) ) in the minor counterpart (delimited TM-I to III, plus TM-VII) in CCR1. A straightening of TM-II by Ala-substitution of ProII:18 confirmed its unique role in CCR1. The extracellular loop 2 (ECL-2) contributed directly to the small molecule binding site in CCR1, whereas it contributed to efficacy, but not potency in CCR8.

Conclusion and implications: Despite high ligand potency and efficacy and receptor similarity, this dual-active and bitopic compound binds oppositely in CCR1 and CCR8 with different roles of ECL-2, thereby expanding and diversifying the influence of extracellular receptor regions in drug action.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Binding Sites
  • COS Cells
  • Chlorocebus aethiops
  • Glutamic Acid / metabolism
  • Humans
  • Inositol 1,4,5-Trisphosphate / metabolism*
  • Ligands
  • Models, Molecular
  • Piperidines / chemistry
  • Piperidines / metabolism
  • Piperidines / pharmacology*
  • Point Mutation
  • Receptors, CCR1 / agonists
  • Receptors, CCR1 / genetics
  • Receptors, CCR1 / metabolism*
  • Receptors, CCR8 / agonists
  • Receptors, CCR8 / genetics
  • Receptors, CCR8 / metabolism*
  • Tetrazoles / chemistry
  • Tetrazoles / metabolism
  • Tetrazoles / pharmacology*

Substances

  • 1-(3-(2-chlorophenoxy)benzyl)-4-(5-chloro-2-(1H-tetrazol-5-yl)phenyl)piperidin-4-ol
  • Ligands
  • Piperidines
  • Receptors, CCR1
  • Receptors, CCR8
  • Tetrazoles
  • Glutamic Acid
  • Inositol 1,4,5-Trisphosphate