Molecular systematics of Polygonum minus Huds. based on ITS sequences

Int J Mol Sci. 2011;12(11):7626-34. doi: 10.3390/ijms12117626. Epub 2011 Nov 7.

Abstract

Plastid trnL-trnF and nuclear ribosomal ITS sequences were obtained from selected wild-type individuals of Polygonum minus Huds. in Peninsular Malaysia. The 380 bp trnL-trnF sequences of the Polygonum minus accessions were identical. Therefore, the trnL-trnF failed to distinguish between the Polygonum minus accessions. However, the divergence of ITS sequences (650 bp) among the Polygonum minus accessions was 1%, indicating that these accessions could be distinguished by the ITS sequences. A phylogenetic relationship based on the ITS sequences was inferred using neighbor-joining, maximum parsimony and Bayesian inference. All of the tree topologies indicated that Polygonum minus from Peninsular Malaysia is unique and different from the synonymous Persicaria minor (Huds.) Opiz and Polygonum kawagoeanum Makino.

Keywords: ITS; Polygonum minus; phylogenetics; plastid DNA; trnL-trnF.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bayes Theorem
  • Cloning, Molecular
  • DNA, Plant / genetics
  • DNA, Ribosomal Spacer / genetics*
  • Malaysia
  • Phylogeny*
  • Plastids / genetics
  • Polygonum / classification*
  • Polygonum / genetics*
  • Sequence Analysis, DNA

Substances

  • DNA, Plant
  • DNA, Ribosomal Spacer