Sphingobacterium kyonggiense sp. nov., isolated from chloroethene-contaminated soil, and emended descriptions of Sphingobacterium daejeonense and Sphingobacterium mizutaii

Int J Syst Evol Microbiol. 2012 Nov;62(Pt 11):2559-2564. doi: 10.1099/ijs.0.024737-0. Epub 2011 Dec 16.

Abstract

A Gram-reaction-negative, strictly aerobic, rod-shaped, non-motile strain, designated 2-1-2(T), was isolated from perchloroethylene/trichloroethene-contaminated soil in Suwon, South Korea. A polyphasic approach was used to study the taxonomic position of strain 2-1-2(T). Strain 2-1-2(T) showed highest 16S rRNA gene sequence similarities to Sphingobacterium daejeonense TR6-04(T) (97.9%) and Sphingobacterium mizutaii ATCC 33299(T) (97.1%); sequence similarities to other Sphingobacterium species were less than 93.0%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain 2-1-2(T) belonged to the clade formed by members of the genus Sphingobacterium in the family Sphingobacteriaceae. The G+C content of the genomic DNA was 36.6 mol%. Strain 2-1-2(T) showed the typical chemotaxonomic features of the genus Sphingobacterium, with the presence of a ceramide phosphorylethanolamine (CerPE-2) as the major ceramide, menaquinone 7 (MK-7) as the predominant respiratory quinone and iso-C(15:0), iso-C(17:0) 3-OH and summed feature 3 (comprising iso-C(15:0) 2-OH and/or C(16:1)ω7c) as the major fatty acids. On the basis of phylogenetic inference, fatty acid profile and other phenotypic properties, and DNA-DNA relatedness, strain 2-1-2(T) represents a novel species of the genus Sphingobacterium, for which the name Sphingobacterium kyonggiense sp. nov. is proposed; the type strain is 2-1-2(T) (=KEMC 2241-005(T)=JCM 16704(T)). Emended descriptions of Sphingobacterium daejeonense and Sphingobacterium mizutaii are also proposed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Ceramides / analysis
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Molecular Sequence Data
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Republic of Korea
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Soil Pollutants
  • Sphingobacterium / classification*
  • Sphingobacterium / genetics
  • Sphingobacterium / isolation & purification
  • Tetrachloroethylene
  • Trichloroethylene
  • Vitamin K 2 / analogs & derivatives
  • Vitamin K 2 / analysis

Substances

  • Ceramides
  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Soil Pollutants
  • Vitamin K 2
  • Trichloroethylene
  • menaquinone 7
  • Tetrachloroethylene

Associated data

  • GENBANK/GU358699