Polyamidoamine (PAMAM) dendrimers and their charged state in deuterium oxide have been investigated with proton pulsed field gradient diffusion nuclear magnetic resonance (PFG-NMR) and small-angle neutron scattering (SANS) techniques. NMR measurements suggest that significant variation of the hydrodynamic radius, calculated by the Stokes-Einstein relation with appropriate surface conditions, is observed upon increasing the molecular protonation. However, a comparative SANS experiment indicates little dependence of the dendrimer global size, in terms of its radius of gyration, on molecular protonation. The inconsistency indicates the necessity of incorporating the effect of molecular interface modification and molecular porosity provided by dressed counterions, when dynamical measurements are used for the determination of the structural characteristics of ionic soft colloids even in dilute suspensions.