A 5'-terminal phosphate is required for stable ternary complex formation and translation of leaderless mRNA in Escherichia coli

RNA. 2012 Mar;18(3):508-18. doi: 10.1261/rna.027698.111. Epub 2012 Jan 30.

Abstract

The bacteriophage λ's cI mRNA was utilized to examine the importance of the 5'-terminal phosphate on expression of leadered and leaderless mRNA in Escherichia coli. A hammerhead ribozyme was used to produce leadered and leaderless mRNAs, in vivo and in vitro, that contain a 5'-hydroxyl. Although these mRNAs may not occur naturally in the bacterial cell, they allow for the study of the importance of the 5'-phosphorylation state in ribosome binding and translation of leadered and leaderless mRNAs. Analyses with mRNAs containing either a 5'-phosphate or a 5'-hydroxyl indicate that leaderless cI mRNA requires a 5'-phosphate for stable ribosome binding in vitro as well as expression in vivo. Ribosome-binding assays show that 30S subunits and 70S ribosomes do not bind as strongly to 5'-hydroxyl as they do to 5'-phosphate containing leaderless mRNA and the tRNA-dependent ternary complex is less stable. Additionally, filter-binding assays revealed that the 70S ternary complex formed with a leaderless mRNA containing a 5'-hydroxyl has a dissociation rate (k(off)) that is 4.5-fold higher compared with the complex formed with a 5'-phosphate leaderless mRNA. Fusion to a lacZ reporter gene revealed that leaderless cI mRNA expression with a 5'-hydroxyl was >100-fold lower than the equivalent mRNA with a 5'-phosphate. These data indicate that a 5'-phosphate is an important feature of leaderless mRNA for stable ribosome binding and expression.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • 5' Untranslated Regions
  • Dinucleoside Phosphates / metabolism*
  • Escherichia coli / genetics*
  • Escherichia coli / metabolism
  • Gene Fusion / genetics
  • Hydroxides / metabolism
  • Protein Biosynthesis*
  • RNA, Bacterial / chemistry
  • RNA, Bacterial / metabolism
  • RNA, Catalytic / metabolism
  • RNA, Messenger / chemistry*
  • RNA, Messenger / metabolism*
  • Ribosomes / metabolism
  • Transcription, Genetic

Substances

  • 5' Untranslated Regions
  • Dinucleoside Phosphates
  • Hydroxides
  • RNA, Bacterial
  • RNA, Catalytic
  • RNA, Messenger
  • hammerhead ribozyme
  • hydroxide ion