Disentangling the relationship between sex-biased gene expression and X-linkage

Genome Res. 2012 Jul;22(7):1255-65. doi: 10.1101/gr.132100.111. Epub 2012 Apr 12.

Abstract

X chromosomes are preferentially transmitted through females, which may favor the accumulation of X-linked alleles/genes with female-beneficial effects. Numerous studies have shown that genes with sex-biased expression are under- or over-represented on the X chromosomes of a wide variety of organisms. The patterns, however, vary between different animal species, and the causes of these differences are unresolved. Additionally, genes with sex-biased expression tend to be narrowly expressed in a limited number of tissues, and narrowly expressed genes are also non-randomly X-linked in a taxon-specific manner. It is therefore unclear whether the unique gene content of the X chromosome is the result of selection on genes with sex-biased expression, narrowly expressed genes, or some combination of the two. To address this problem, we measured sex-biased expression in multiple Drosophila species and at different developmental time points. These data were combined with available expression measurements from Drosophila melanogaster and mouse to reconcile the inconsistencies in X-chromosome content among taxa. Our results suggest that most of the differences between Drosophila and mammals are confounded by disparate data collection/analysis approaches as well as the correlation between sex bias and expression breadth. Both the Drosophila and mouse X chromosomes harbor an excess of genes with female-biased expression after controlling for the confounding factors, suggesting that the asymmetrical transmission of the X chromosome favors the accumulation of female-beneficial mutations in X-linked genes. However, some taxon-specific patterns remain, and we provide evidence that these are in part a consequence of constraints imposed by the dosage compensation mechanism in Drosophila.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural

MeSH terms

  • Animals
  • Chromosome Mapping / methods
  • Dosage Compensation, Genetic*
  • Drosophila / genetics*
  • Drosophila / metabolism
  • Expressed Sequence Tags
  • Female
  • Gene Expression Profiling
  • Genes, Insect
  • Genes, X-Linked*
  • Genetic Linkage*
  • Larva / genetics
  • Larva / metabolism
  • Male
  • Mice
  • Selection, Genetic
  • Sex Factors
  • Testis / cytology
  • Testis / metabolism
  • X Chromosome / genetics*
  • X Chromosome / metabolism

Associated data

  • GEO/GSE23309
  • GEO/GSE31722
  • GEO/GSE31723