Alternative to Ritt's pseudodivision for finding the input-output equations of multi-output models

Math Biosci. 2012 Sep;239(1):117-23. doi: 10.1016/j.mbs.2012.04.008. Epub 2012 May 22.

Abstract

Differential algebra approaches to structural identifiability analysis of a dynamic system model in many instances heavily depend upon Ritt's pseudodivision at an early step in analysis. The pseudodivision algorithm is used to find the characteristic set, of which a subset, the input-output equations, is used for identifiability analysis. A simpler algorithm is proposed for this step, using Gröbner Bases, along with a proof of the method that includes a reduced upper bound on derivative requirements. Efficacy of the new algorithm is illustrated with several biosystem model examples.

MeSH terms

  • Algorithms*
  • HIV Infections / epidemiology
  • Humans
  • Influenza, Human / epidemiology
  • Models, Theoretical*
  • Software
  • Sulfobromophthalein / pharmacokinetics

Substances

  • Sulfobromophthalein