Boosting the sensitivity of ligand-protein screening by NMR of long-lived states

J Am Chem Soc. 2012 Jul 11;134(27):11076-9. doi: 10.1021/ja303301w. Epub 2012 Jun 27.

Abstract

A new NMR method for the study of ligand-protein interactions exploits the unusual lifetimes of long-lived states (LLSs). The new method provides better contrast between bound and free ligands and requires a protein-ligand ratio ca. 25 times lower than for established T(1ρ) methods, thus saving on costly proteins. The new LLS method was applied to the screening of inhibitors of urokinase-type plasminogen activator (uPA), which is a prototypical target of cancer research. With only 10 μM protein, a dissociation constant (K(D)) of 180 ± 20 nM was determined for the strong ligand (inhibitor) UK-18, which can be compared with K(D) = 157 ± 39 nM determined by the established surface plasmon resonance method.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / pharmacology*
  • Humans
  • Ligands
  • Magnetic Resonance Spectroscopy / methods*
  • Models, Molecular
  • Oligopeptides / chemistry
  • Oligopeptides / pharmacology*
  • Protein Binding
  • Urokinase-Type Plasminogen Activator / antagonists & inhibitors*
  • Urokinase-Type Plasminogen Activator / chemistry
  • Urokinase-Type Plasminogen Activator / metabolism

Substances

  • Enzyme Inhibitors
  • Ligands
  • Oligopeptides
  • glycyl-glycyl-argininal
  • Urokinase-Type Plasminogen Activator