Hepatitis B virus genotypes and subgenotypes in the Eastern Black Sea region of Turkey

Saudi Med J. 2012 Jun;33(6):622-6.

Abstract

Objective: To determine the hepatitis B virus (HBV) genotypes and subgenotypes in patients with HBV infection in the Eastern Black Sea region of Turkey.

Methods: One hundred and thirty-seven patients' samples collected over 5 years (January 2005 to January 2010) at Farabi Hospital in Karadeniz Technical University, Trabzon, Turkey were included in the study. All patients were positive for hepatitis B surface antigen (HBsAg) and HBV DNA. The HBV genotypes were determined by the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method using an amplified segment of the pre-S region of HBV.

Results: One hundred and twenty-five of the 137 HBV samples (91.3%) were identified as genotype D using the PCR-RFLP method. Twelve isolates had undefined patterns, 122 of the 125 samples (97.6%) were determined as subgenotype D2, 2 (1.6%) were subgenotype D1, and one (0.8%) was subgenotype D-del.

Conclusion: Similar findings in the other parts of the Turkey, the predominant patterns of HBV prevailing among patients in the Eastern Black Sea region of Turkey were of genotype D and subgenotype D2.

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Amplified Fragment Length Polymorphism Analysis
  • Black Sea
  • Child
  • DNA, Viral / isolation & purification
  • Endemic Diseases*
  • Female
  • Genotype
  • Hepatitis B / diagnosis*
  • Hepatitis B / epidemiology*
  • Hepatitis B / immunology
  • Hepatitis B Surface Antigens / blood
  • Hepatitis B e Antigens / blood
  • Hepatitis B virus / genetics*
  • Hepatitis B virus / immunology
  • Hepatitis B virus / isolation & purification
  • Hospitals, University
  • Humans
  • Male
  • Middle Aged
  • Prevalence
  • Turkey / epidemiology

Substances

  • DNA, Viral
  • Hepatitis B Surface Antigens
  • Hepatitis B e Antigens