Characterization of the Suillus grevillei quinone synthetase GreA supports a nonribosomal code for aromatic α-keto acids

Chembiochem. 2012 Aug 13;13(12):1798-804. doi: 10.1002/cbic.201200187. Epub 2012 Jun 22.

Abstract

The gene greA was cloned from the genome of the basidiomycete Suillus grevillei. It encodes a monomodular natural product biosynthesis protein composed of three domains for adenylation, thiolation, and thioesterase and, hence, is reminiscent of a nonribosomal peptide synthetase (NRPS). GreA was biochemically characterized in vitro. It was identified as atromentin synthetase and therefore represents one of only a limited number of biochemically characterized NRPS-like enzymes which accept an aromatic α-keto acid. Specificity-conferring amino acid residues--collectively referred to as the nonribosomal code--were predicted for the primary sequence of the GreA adenylation domain and were an unprecedented combination for aromatic α-keto acids. Plausible support for this new code came from in silico simulation of the adenylation domain structure. According to the model, the predicted residues line the active site and, therefore, very likely contribute to substrate specificity.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Basidiomycota / chemistry
  • Basidiomycota / enzymology*
  • Basidiomycota / genetics
  • Benzoquinones / chemistry
  • Benzoquinones / metabolism*
  • Catalytic Domain
  • Computer Simulation
  • Escherichia coli / genetics
  • Fungal Proteins / chemistry*
  • Fungal Proteins / genetics
  • Fungal Proteins / metabolism
  • Keto Acids / chemistry*
  • Keto Acids / metabolism
  • Models, Molecular
  • Molecular Sequence Data
  • Peptide Synthases / chemistry*
  • Peptide Synthases / genetics
  • Peptide Synthases / metabolism
  • Phenols / chemistry
  • Phenols / metabolism*
  • Protein Structure, Tertiary
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Substrate Specificity

Substances

  • Benzoquinones
  • Fungal Proteins
  • Keto Acids
  • Phenols
  • Recombinant Proteins
  • atromentin
  • Peptide Synthases
  • non-ribosomal peptide synthase