A general G1/S-phase cell-cycle control module in the flowering plant Arabidopsis thaliana

PLoS Genet. 2012;8(8):e1002847. doi: 10.1371/journal.pgen.1002847. Epub 2012 Aug 2.

Abstract

The decision to replicate its DNA is of crucial importance for every cell and, in many organisms, is decisive for the progression through the entire cell cycle. A comparison of animals versus yeast has shown that, although most of the involved cell-cycle regulators are divergent in both clades, they fulfill a similar role and the overall network topology of G1/S regulation is highly conserved. Using germline development as a model system, we identified a regulatory cascade controlling entry into S phase in the flowering plant Arabidopsis thaliana, which, as a member of the Plantae supergroup, is phylogenetically only distantly related to Opisthokonts such as yeast and animals. This module comprises the Arabidopsis homologs of the animal transcription factor E2F, the plant homolog of the animal transcriptional repressor Retinoblastoma (Rb)-related 1 (RBR1), the plant-specific F-box protein F-BOX-LIKE 17 (FBL17), the plant specific cyclin-dependent kinase (CDK) inhibitors KRPs, as well as CDKA;1, the plant homolog of the yeast and animal Cdc2⁺/Cdk1 kinases. Our data show that the principle of a double negative wiring of Rb proteins is highly conserved, likely representing a universal mechanism in eukaryotic cell-cycle control. However, this negative feedback of Rb proteins is differently implemented in plants as it is brought about through a quadruple negative regulation centered around the F-box protein FBL17 that mediates the degradation of CDK inhibitors but is itself directly repressed by Rb. Biomathematical simulations and subsequent experimental confirmation of computational predictions revealed that this regulatory circuit can give rise to hysteresis highlighting the here identified dosage sensitivity of CDK inhibitors in this network.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Arabidopsis / genetics
  • Arabidopsis / metabolism*
  • Arabidopsis Proteins / genetics
  • Arabidopsis Proteins / metabolism
  • CDC2 Protein Kinase / genetics
  • CDC2 Protein Kinase / metabolism
  • Computer Simulation
  • Cyclin-Dependent Kinase Inhibitor Proteins / genetics
  • Cyclin-Dependent Kinase Inhibitor Proteins / metabolism
  • Cyclin-Dependent Kinases / genetics
  • Cyclin-Dependent Kinases / metabolism
  • E2F4 Transcription Factor / genetics
  • E2F4 Transcription Factor / metabolism
  • F-Box Proteins / genetics
  • F-Box Proteins / metabolism
  • Flowers / genetics
  • Flowers / metabolism*
  • G1 Phase / genetics*
  • Gene Expression Regulation, Plant*
  • Gene Regulatory Networks
  • Models, Biological
  • S Phase / genetics*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism

Substances

  • AT3G54650 protein, Arabidopsis
  • Arabidopsis Proteins
  • Cyclin-Dependent Kinase Inhibitor Proteins
  • E2F4 Transcription Factor
  • F-Box Proteins
  • RBR1 protein, Arabidopsis
  • CDC2 Protein Kinase
  • CDKA1 protein, Arabidopsis
  • Cyclin-Dependent Kinases

Grants and funding

This work was supported by an EMBO Long-Term Fellowship (to MKN), two grants of the European Union, “MitoSys” and “UniCellSys” (to BN), a grant in the frame of a Collaborative Research Centre (Sonderforschungsbereich) SFB924 by the German Research Foundation (Deutsche Forschungsgemeinschaft, DFG) (to SS), a grant “Action Thématique et Incitative sur Programme” from the Centre National de la Recherche Scientifique (to AS), a European Union Interreg IV project, and a European Research Council Starting Independent Researcher Grant (to AS). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.