Enrichment and dynamics of novel syntrophs in a methanogenic hexadecane-degrading culture from a Chinese oilfield

FEMS Microbiol Ecol. 2013 Mar;83(3):757-66. doi: 10.1111/1574-6941.12031. Epub 2012 Nov 7.

Abstract

Methanogenic communities that degrade alkanes have been reported. However, little is known about the key players involved in the process. Methanogenic hexadecane-degrading consortia were enriched from an oilfield (Shengli, China). The microbial dynamics during the transfer incubations were monitored using terminal restriction fragment length polymorphism (T-RFLP) fingerprinting of 16S rRNA genes in combination with cloning and sequencing. The archaeal community shifted from a predominance of aceticlastic Methanosaeta during early cultivation to a substantial increase in hydrogenotrophic Methanoculleus in the highly enriched culture. Bacterial T-RFs 161 and 164 bp were consistently detected during the incubation and became dominant in the highly enriched culture. T-RF 161 bp primarily represented uncultured Waste Water of Evry 1 bacterium, which was possibly associated with Candidatus Cloacamonas acidaminovorans (99.7% sequence similarity). T-RF 164 bp could be assigned to both Thermotogaceae, with the closest relative being Candidatus Mesotoga sulfurreducens (similarity of 97%) and Syntrophaceae, with Smithella propionica as the closest relative (similarity of 96-97%). These bacterial lineages were potentially capable of syntrophic interactions with methanogen partners during hexadecane degradation. Partial assA genes (encoding the α-subunit of alkylsuccinate synthase) were also detected, implying that the mechanism of fumarate addition may function in the hexadecane activation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alkanes / metabolism*
  • Bacteria / classification
  • Bacteria / genetics
  • Bacteria / metabolism*
  • China
  • DNA, Archaeal / genetics
  • DNA, Bacterial / genetics
  • Euryarchaeota / classification
  • Euryarchaeota / genetics
  • Euryarchaeota / metabolism*
  • Methane / metabolism
  • Microbial Consortia*
  • Oil and Gas Fields / microbiology*
  • Phylogeny
  • Polymorphism, Restriction Fragment Length
  • RNA, Ribosomal, 16S / genetics

Substances

  • Alkanes
  • DNA, Archaeal
  • DNA, Bacterial
  • RNA, Ribosomal, 16S
  • n-hexadecane
  • Methane