Distinct tissue expression profiles of chicken Lpin1-α/β isoforms and the effect of the variation on muscle fiber traits

Gene. 2013 Feb 25;515(2):281-90. doi: 10.1016/j.gene.2012.11.075. Epub 2012 Dec 21.

Abstract

Here we cloned chicken Lpin1-β, conducted the temporal and spatial expression pattern analysis of chicken Lpin1 isoforms by real-time PCR, and studied the 5' flanking region variation and the potential effect. It was found that chicken Lpin1-α and Lpin1-β exhibited distinct tissue expression profiling, with prominent expression in the ovary and muscle tissues respectively. Chicken Lpin1 presented a tissue-specific temporal expression pattern in postnatal development (0-16 weeks). Energy restriction significantly elevated the mRNA level of total Lpin1 by increasing the expression of Lpin1-α and Lpin1-β in a nearly same magnitude. Eight variants/four haplotypes among six breeds were detected from the 5' flanking region of chicken Lpin1, one multiple-nucleotide length polymorphism (g.258M>N) was found and predicted causing the change of 31 transcription factor binding sites including MyoD et al. Both g.258M>N and g. 65C>T variants showed significant association with muscle fiber traits, which suggested one novel role of Lpin1 on muscle fiber development.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Flanking Region
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Caloric Restriction
  • Chickens / genetics*
  • Chickens / growth & development
  • Chickens / metabolism
  • Gene Expression Regulation, Developmental
  • Gene Expression Regulation, Enzymologic*
  • Haplotypes
  • Lipid Metabolism / genetics
  • Liver / enzymology
  • Liver / growth & development
  • Molecular Sequence Data
  • Muscle Fibers, Skeletal / enzymology*
  • Muscle, Skeletal / enzymology
  • Muscle, Skeletal / growth & development
  • Organ Specificity
  • Phenotype
  • Phosphatidate Phosphatase / genetics
  • Phosphatidate Phosphatase / metabolism
  • Phosphatidate Phosphatase / physiology*
  • Polymorphism, Genetic
  • Protein Isoforms / genetics
  • Protein Isoforms / metabolism
  • Protein Isoforms / physiology
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid

Substances

  • Protein Isoforms
  • Phosphatidate Phosphatase

Associated data

  • GENBANK/JN007384