Sequence specificity of the deoxyribonuclease activity of 1,10-phenanthroline-copper ion

Biochemistry. 1990 Feb 27;29(8):2116-21. doi: 10.1021/bi00460a022.

Abstract

A statistical analysis of a data set composed of over 1600 scission events of DNA produced by the 2:1 1,10-phenanthroline-copper complex (OP-Cu) has demonstrated that the nucleotide 5' to the site of phosphodiester bond scission is a primary influence in the kinetics of cleavage at any sequence position. The scission was less affected by the 3' neighbor. For each of the sixteen possible dinucleotides, a kinetic parameter can be computed reflecting scission at the 3' nucleotide. When used to predict the scission pattern of a DNA sequence not part of the present data set, correlation coefficients of about 0.6 between predicted and observed patterns were obtained.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Copper*
  • Cross-Linking Reagents*
  • DNA
  • Deoxyribonucleases*
  • Intercalating Agents*
  • Kinetics
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Phenanthrolines*
  • Purine Nucleotides
  • Pyrimidine Nucleotides
  • Templates, Genetic

Substances

  • Cross-Linking Reagents
  • Intercalating Agents
  • Phenanthrolines
  • Purine Nucleotides
  • Pyrimidine Nucleotides
  • Copper
  • DNA
  • Deoxyribonucleases
  • 1,10-phenanthroline