The adsorption of carbon dioxide, methane, and their mixtures in nanoporous carbons in the presence of water is studied using experiments and molecular simulations. Both the experimental and numerical samples contain polar groups that account for their partially hydrophilicity. For small amounts of adsorbed water, although the shape of the adsorption isotherms remain similar, both the molecular simulations and experiments show a slight decrease in the CO2 and CH4 adsorption amounts. For large amounts of adsorbed water, the experimental data suggest the formation of methane or carbon dioxide clathrates in agreement with previous work. In contrast, the molecular simulations do not account for the formation of such clathrates. Another important difference between the simulated and experimental data concerns the number of water molecules that desorb upon increasing the pressure of carbon dioxide and methane. Although the experimental data indicate that water remains adsorbed upon carbon dioxide and methane adsorption, the molecular simulations suggest that 40 to 75% of the initial amount of adsorbed water desorbs with carbon dioxide or methane pressure. Such discrepancies show that differences between the simulated and experimental samples are crucial to account for the rich phase behavior of confined water-gas systems. Our simulations for carbon dioxide-methane coadsorption in the presence of water suggest that the pore filling is not affected by the presence of water and that adsorbed solution theory can be applied for pressures as high as 15 MPa.