The N-terminal fragment of Acanthamoeba polyphaga mimivirus tyrosyl-tRNA synthetase (TyrRS(apm)) is a monomer in solution

FEBS Lett. 2013 Mar 18;587(6):590-9. doi: 10.1016/j.febslet.2013.01.048. Epub 2013 Feb 4.

Abstract

Acanthamoeba polyphaga mimivirus tyrosyl-tRNA synthetase (TyrRSapm) was the first reported aminoacyl-tRNA synthetase of viral origin. The previous crystal structure of TyrRSapm showed a non-canonical orientation of the dimer conformation and the CP1 domain, responsible for dimer formation, displays a major modification of a motif structurally conserved in other TyrRS structures. An earlier study reported that Bacillus stearothermophilus N-terminal TyrRS exists as a dimer under native conditions. N-terminal TyrRSapm (ΔTyrRSapm, 1-234 aa) was constructed to remove the C-terminal anticodon-binding domain. Here we show by Ferguson plot analysis and analytical ultracentrifugation that ΔTyrRSapm exists as a monomer and contains a disulfide-bridge. The ΔTyrRSapm loses the ability to bind tRNA(Tyr), however it remains active in pyrophosphate exchange with similar ligand dissociation constants as the full-length enzyme.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Circular Dichroism
  • Diphosphates / chemistry*
  • Diphosphates / metabolism
  • Disulfides / chemistry
  • Humans
  • Kinetics
  • Ligands
  • Mimiviridae / chemistry*
  • Mimiviridae / enzymology
  • Mimiviridae / genetics
  • Mutation
  • Protein Multimerization
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Solutions
  • Thermodynamics
  • Tyrosine-tRNA Ligase / chemistry*
  • Tyrosine-tRNA Ligase / genetics
  • Tyrosine-tRNA Ligase / metabolism
  • Ultracentrifugation
  • Viral Proteins / chemistry*
  • Viral Proteins / genetics
  • Viral Proteins / metabolism

Substances

  • Diphosphates
  • Disulfides
  • Ligands
  • Recombinant Proteins
  • Solutions
  • Viral Proteins
  • diphosphoric acid
  • Tyrosine-tRNA Ligase