Structure of a human IgA1 Fab fragment at 1.55 Å resolution: potential effect of the constant domains on antigen-affinity modulation

Acta Crystallogr D Biol Crystallogr. 2013 Mar;69(Pt 3):388-97. doi: 10.1107/S0907444912048664. Epub 2013 Feb 16.

Abstract

Despite being the most abundant class of immunoglobulins in humans and playing central roles in the adaptive immune response, high-resolution structural data are still lacking for the antigen-binding region of human isotype A antibodies (IgAs). The crystal structures of a human Fab fragment of IgA1 in three different crystal forms are now reported. The three-dimensional organization is similar to those of other Fab classes, but FabA1 seems to be more rigid, being constrained by a hydrophobic core in the interface between the variable and constant domains of the heavy chain (VH-CH1) as well as by a disulfide bridge that connects the light and heavy chains, influencing the relative heavy/light-chain orientation. The crystal structure of the same antibody but with a G-isotype CH1 which is reported to display different antigen affinity has also been solved. The differential structural features reveal plausible mechanisms for constant/variable-domain long-distance effects whereby antibody class switching could alter antigen affinity.

Keywords: antibodies; antigen-affinity control; human IgA; protein conformational entropy.

MeSH terms

  • Antigen-Antibody Reactions* / physiology
  • Antigens / chemistry*
  • Antigens / physiology
  • Binding Sites, Antibody*
  • Clostridium / enzymology
  • Crystallography, X-Ray
  • Humans
  • Immunoglobulin A / chemistry*
  • Immunoglobulin A / physiology
  • Immunoglobulin Constant Regions / chemistry*
  • Immunoglobulin Constant Regions / physiology
  • Immunoglobulin Fab Fragments / chemistry*
  • Immunoglobulin Fab Fragments / physiology
  • Neisseria gonorrhoeae / enzymology
  • Protein Structure, Tertiary
  • Serine Endopeptidases / chemistry*
  • Serine Endopeptidases / physiology

Substances

  • Antigens
  • Immunoglobulin A
  • Immunoglobulin Constant Regions
  • Immunoglobulin Fab Fragments
  • Serine Endopeptidases
  • IgA-specific serine endopeptidase

Associated data

  • PDB/2EH7
  • PDB/3M8O
  • PDB/3QNX
  • PDB/3QNY
  • PDB/3QNZ
  • PDB/3QO1