Lysinibacillus manganicus sp. nov., isolated from manganese mining soil

Int J Syst Evol Microbiol. 2013 Oct;63(Pt 10):3568-3573. doi: 10.1099/ijs.0.050492-0. Epub 2013 Apr 12.

Abstract

A Gram-stain-positive, aerobic, motile, rod-shaped bacterium, designated strain Mn1-7(T), was isolated from manganese mining soil in Tianjin, China. The closest phylogenetic relatives were Lysinibacillus massiliensis CCUG 49529(T) (97.2 % 16S rRNA gene sequence similarity), L. xylanilyticus XDB9(T) (96.7 %), L. sinduriensis JCM 15800(T) (96.2 %), L. odysseyi NBRC 100172(T) (95.9 %) and L. boronitolerans NBRC 103108(T) (95.4 %) (the type species of the genus). DNA-DNA hybridization values for strain Mn1-7(T) with the type strains of L. massiliensis and L. sinduriensis were 24.9 and 27.7 %, respectively. The genomic DNA G+C content was 38.4 mol%. The major menaquinone was MK-7 and the major fatty acids were iso-C15 : 0, iso-C16 : 0 and iso-C14 : 0. The major polar lipids were diphosphatidylglycerol and phosphatidylglycerol. The cell-wall peptidoglycan was type A4α (L-Lys-D-Asp), and the predominant cell-wall sugar was xylose. DNA-DNA hybridization results and comparison of phenotypic and chemotaxonomic characters between strain Mn1-7(T) and the phylogenetically most closely related strains revealed that the isolate represents a novel species of the genus Lysinibacillus, for which the name Lysinibacillus manganicus sp. nov. is proposed. The type strain is Mn1-7(T) ( = DSM 26584(T) = CCTCC AB 2012916(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacillaceae / classification*
  • Bacillaceae / genetics
  • Bacillaceae / isolation & purification
  • Bacterial Typing Techniques
  • Base Composition
  • China
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Manganese
  • Mining*
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Peptidoglycan / analysis
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Vitamin K 2 / analogs & derivatives
  • Vitamin K 2 / analysis

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Peptidoglycan
  • RNA, Ribosomal, 16S
  • Vitamin K 2
  • Manganese
  • menaquinone 7

Associated data

  • GENBANK/JX993821