Genome-wide identification of bone metastasis-related microRNAs in lung adenocarcinoma by high-throughput sequencing

PLoS One. 2013 Apr 8;8(4):e61212. doi: 10.1371/journal.pone.0061212. Print 2013.

Abstract

Background: MicroRNAs (miRNAs) are a class of small noncoding RNAs that regulate gene expression at the post-transcriptional level. They participate in a wide variety of biological processes, including apoptosis, proliferation and metastasis. The aberrant expression of miRNAs has been found to play an important role in many cancers.

Results: To understand the roles of miRNAs in the bone metastasis of lung adenocarcinoma, we constructed two small RNA libraries from blood of lung adenocarcinoma patients with and without bone metastasis. High-throughput sequencing combined with differential expression analysis identified that 7 microRNAs were down-regulated and 21 microRNAs were up-regulated in lung adenocarcinoma with bone metastasis. A total of 797 target genes of the differentially expressed microRNAs were identified using a bioinformatics approach. Functional annotation analysis indicated that a number of pathways might be involved in bone metastasis, survival of the primary origin and metastatic angiogenesis of lung adenocarcinoma. These include the MAPK, Wnt, and NF-kappaB signaling pathways, as well as pathways involving the matrix metalloproteinase, cytoskeletal protein and angiogenesis factors.

Conclusions: This study provides some insights into the molecular mechanisms that underlie lung adenocarcinoma development, thereby aiding the diagnosis and treatment of the disease.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenocarcinoma / pathology*
  • Adenocarcinoma of Lung
  • Bone Neoplasms / genetics*
  • Bone Neoplasms / secondary*
  • Female
  • Genome, Human / genetics
  • Genomics*
  • High-Throughput Nucleotide Sequencing*
  • Humans
  • Lung Neoplasms / pathology*
  • Male
  • MicroRNAs / genetics*
  • Middle Aged
  • Molecular Sequence Annotation
  • Sequence Analysis, RNA*
  • Transcriptome

Substances

  • MicroRNAs

Grants and funding

This work was supported in part by grants (no. 81260322/H1606) from the National Natural Science Foundation of China, grants (no. 2012FB163) from the Natural Science Foundation of Yunnan Province, grants (no. 2011FB201) from the Joint Special Funds for the Department of Science and Technology of Yunnan Province-Kunming Medical University, grants (no. 11S030003) from Kunming Major Program of Science and Technology Development, grants (no. 2011Y192) from the scientific research fund from department of Education of Yunnan Province, and grants (no. D-201242) from the specialty fund of high-level talents medical personnel training of Yunnan province. No additional external funding received for this study. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.