Computational analysis of four human adenovirus type 4 genomes reveals molecular evolution through two interspecies recombination events

Virology. 2013 Sep 1;443(2):197-207. doi: 10.1016/j.virol.2013.05.014. Epub 2013 Jun 10.

Abstract

Computational analysis of human adenovirus type 4 (HAdV-E4), a pathogen that is the only HAdV member of species E, provides insights into its zoonotic origin and molecular adaptation. Its genome encodes a domain of the major capsid protein, hexon, from HAdV-B16 recombined into the genome chassis of a simian adenovirus. Genomes of two recent field strains provide a clue to its adaptation to the new host: recombination of a NF-I binding site motif, which is required for efficient viral replication, from another HAdV genome. This motif is absent in the chimpanzee adenoviruses and the HAdV-E4 prototype, but is conserved amongst other HAdVs. This is the first report of an interspecies recombination event for HAdVs, and the first documentation of a lateral partial gene transfer from a chimpanzee AdV. The potential for such recombination events are important when considering chimpanzee adenoviruses as candidate gene delivery vectors for human patients.

Keywords: Adenovirus; Molecular evolution; Recombination; Zoonosis.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Adenovirus Infections, Human / virology
  • Adenoviruses, Human / genetics*
  • Adenoviruses, Simian / genetics*
  • Animals
  • Base Sequence
  • Computational Biology / methods*
  • Evolution, Molecular*
  • Gene Transfer, Horizontal*
  • Genome, Viral / genetics*
  • Humans
  • Molecular Sequence Data
  • Pan troglodytes / virology
  • Phylogeny
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Viral Proteins / genetics
  • Zoonoses

Substances

  • Viral Proteins

Associated data

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  • GENBANK/AC000007
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  • GENBANK/AC000010
  • GENBANK/AC000011
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  • GENBANK/AY599835
  • GENBANK/AY599837
  • GENBANK/AY601633
  • GENBANK/AY601636
  • GENBANK/AY737797
  • GENBANK/AY803294
  • GENBANK/DQ086466
  • GENBANK/DQ315364
  • GENBANK/FJ025923