Genetic characterization of a novel picornavirus distantly related to the marine mammal-infecting aquamaviruses in a long-distance migrant bird species, European roller (Coracias garrulus)

J Gen Virol. 2013 Sep;94(Pt 9):2029-2035. doi: 10.1099/vir.0.054676-0. Epub 2013 Jun 26.

Abstract

Despite the continuously growing number of known avian picornaviruses (family Picornaviridae), knowledge of their genetic diversity in wild birds, especially in long-distance migrant species is very limited. In this study, we report the presence of a novel picornavirus identified from one of 18 analysed faecal samples of an Afro-Palearctic migrant bird, the European roller (Coracias garrulus L., 1758), which is distantly related to the marine-mammal-infecting seal aquamavirus A1 (genus Aquamavirus). The phylogenetic analyses and the low sequence identity (P1 26.3 %, P2 25.8 % and P3 28.4 %) suggest that this picornavirus could be the founding member of a novel picornavirus genus that we have provisionally named 'Kunsagivirus', with 'Greplavirus A' (strain roller/SZAL6-KuV/2011/HUN, GenBank accession no. KC935379) as the candidate type species.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Birds / virology*
  • Cluster Analysis
  • Feces / virology
  • Gene Order
  • Genome, Viral*
  • Models, Molecular
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Phylogeny
  • Picornaviridae / genetics*
  • Picornaviridae / isolation & purification
  • RNA, Viral / genetics*
  • Sequence Analysis, DNA*
  • Sequence Homology

Substances

  • RNA, Viral

Associated data

  • GENBANK/KC935379