Control of ribosomal subunit rotation by elongation factor G

Science. 2013 Jun 28;340(6140):1235970. doi: 10.1126/science.1235970.

Abstract

Protein synthesis by the ribosome requires the translocation of transfer RNAs and messenger RNA by one codon after each peptide bond is formed, a reaction that requires ribosomal subunit rotation and is catalyzed by the guanosine triphosphatase (GTPase) elongation factor G (EF-G). We determined 3 angstrom resolution x-ray crystal structures of EF-G complexed with a nonhydrolyzable guanosine 5'-triphosphate (GTP) analog and bound to the Escherichia coli ribosome in different states of ribosomal subunit rotation. The structures reveal that EF-G binding to the ribosome stabilizes switch regions in the GTPase active site, resulting in a compact EF-G conformation that favors an intermediate state of ribosomal subunit rotation. These structures suggest that EF-G controls the translocation reaction by cycles of conformational rigidity and relaxation before and after GTP hydrolysis.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Crystallography, X-Ray
  • Escherichia coli / enzymology*
  • Guanosine Triphosphate / chemistry*
  • Hydrolysis
  • Models, Biological
  • Peptide Elongation Factor G / chemistry*
  • Protein Biosynthesis*
  • Protein Conformation
  • Protein Structure, Tertiary
  • RNA, Messenger / chemistry
  • RNA, Transfer / chemistry
  • Ribosome Subunits, Large, Bacterial / chemistry*
  • Rotation

Substances

  • Peptide Elongation Factor G
  • RNA, Messenger
  • Guanosine Triphosphate
  • RNA, Transfer

Associated data

  • PDB/4KIX
  • PDB/4KIY
  • PDB/4KIZ
  • PDB/4KJ0
  • PDB/4KJ1
  • PDB/4KJ2
  • PDB/4KJ3
  • PDB/4KJ4
  • PDB/4KJ5
  • PDB/4KJ6
  • PDB/4KJ7
  • PDB/4KJ8
  • PDB/4KJ9
  • PDB/4KJA
  • PDB/4KJB
  • PDB/4KJC