Prediction of arenavirus fusion peptides on the basis of computer analysis of envelope protein sequences

FEBS Lett. 1990 Aug 20;269(1):145-7. doi: 10.1016/0014-5793(90)81140-j.

Abstract

Theoretical search and selection criteria for putative fusion peptides of enveloped viruses are proposed. Arenavirus fusion peptides are predicted on the basis of computer-assisted analysis of amino acid sequences of arenavirus envelope proteins and elements of their secondary and tertiary structure. Accordingly, two regions of GP2 surface protein from 5 viruses of Arenaviridae family have been detected with properties typical of fusion peptides of other enveloped viruses. One region, named peptide IV, located at the N-terminus of the GP2 protein, is followed by the other region or peptide V, more likely candidate for the arenavirus fusion peptide.

MeSH terms

  • Amino Acid Sequence
  • Arenaviridae*
  • Lassa virus
  • Membrane Glycoproteins / ultrastructure
  • Molecular Sequence Data
  • Peptides
  • Protein Conformation
  • Viral Envelope Proteins* / ultrastructure
  • Viral Fusion Proteins* / ultrastructure

Substances

  • Membrane Glycoproteins
  • Peptides
  • Viral Envelope Proteins
  • Viral Fusion Proteins