The phytoplankton communities in 4 macrophtic lakes (Longgan Lake, Liangzi Lake, Futou Lake and Baoan Lake) in Middle-Lower Yangtze Plain were investigated in September 2011, and 7 phylum and 231 species of phytoplankton were detected in the waters. The results indicated that phytoplankton was mainly composed of Cyanophyta, Bacillariophyta and Chlorophyta. The four lakes were mesotrophic. And the main phytoplankton was Phormidium foveolarum, Synedra ulna, Phormidium tenu and Tribonema minus. The relationships between the distribution of phytoplankton and environmental factors in each sampling site were studies by canonical correspondence analysis. The results demonstrated that pH and Total phosphorus are the key factors for the distribution of phytoplankton communities in 4 typical macrophtic lakes in Middle-Lower Yangtze Plain.