Pilot study using proteomics to identify predictive biomarkers of necrotizing enterocolitis from buccal swabs in very low birth weight infants

Neonatology. 2013;104(3):234-42. doi: 10.1159/000353721. Epub 2013 Sep 12.

Abstract

Background: Necrotizing enterocolitis (NEC) is a major cause of death and morbidity in very low birth weight infants.

Objective: To identify biomarker(s) that would predict NEC using buccal swab samples utilizing a proteomic approach.

Methods: Cumulative buccal swab samples derived from very low birth weight preterm infants (<32 weeks' gestational age and <1,250 g) at 1, 2 and 3 weeks prior to the development of NEC and matched controls were subjected to two-dimensional difference gel electrophoresis and LC-MS/MS analysis for proteomic protein discovery. After identification of 21 altered proteins, we chose 3 candidate proteins using a broad systems biologic analysis approach that suggested several altered cellular processes that could be associated with NEC.

Results: Preliminary validation studies using Western blots on these samples and 10 additional NEC and 10 matched control buccal samples collected within 2 or 3 weeks before NEC diagnosis analysis showed lower interleukin-1 receptor antagonist.

Conclusion: Our results suggest that interleukin-1 receptor antagonist is worthy of further studies to determine its utility in helping predict NEC.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Biomarkers / analysis
  • Blotting, Western
  • Chromatography, Liquid
  • Enterocolitis, Necrotizing / diagnosis*
  • Enterocolitis, Necrotizing / metabolism
  • Female
  • Humans
  • Infant, Newborn
  • Infant, Very Low Birth Weight*
  • Male
  • Mouth Mucosa / chemistry*
  • Pilot Projects
  • Predictive Value of Tests
  • Proteomics / methods*
  • Systems Biology
  • Tandem Mass Spectrometry

Substances

  • Biomarkers