The N-terminal nonapeptide of cephaibols A and C: a naturally occurring example of mismatched helical screw-sense control

Chemistry. 2013 Nov 25;19(48):16357-65. doi: 10.1002/chem.201302648. Epub 2013 Oct 9.

Abstract

The N-terminal nonapeptide domain of the fungal nonribosomal peptide antibiotics cephaibol A and cephaibol C (AcPheAib4LeuIvaGly- Aib) is reported to adopt a right-handed helical conformation in the crystalline state. However, this conformation is at odds with the left-handed helicity observed in solution in related synthetic oligomers capped with Ac-L-PheAib4 fragments. We report the synthesis of four diastereoisomers of the cephaibol N-terminal nonapeptide, and show by NMR and CD spectroscopy that the peptide containing the chiral amino acids Phe and Leu in the naturally occurring relative configuration exists in solution as an interconverting mixture of helical screw-sense conformers. In contrast, the nonapeptide containing the unnatural relative configuration at Phe and Leu adopts a single, stable helical screw-sense, which is left handed when the N-terminal Phe residue is L and right-handed when the N-terminal Phe residue is D.

Keywords: NMR spectroscopy; conformation; foldamers; peptaibiotics; peptides.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids / chemistry
  • Anti-Bacterial Agents / chemistry*
  • Anti-Bacterial Agents / pharmacology
  • Antimicrobial Cationic Peptides
  • Biological Products / chemistry*
  • Biological Products / pharmacology
  • Leucine / chemistry
  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular
  • Oligopeptides / chemical synthesis
  • Oligopeptides / chemistry
  • Peptaibols
  • Peptides / chemistry*
  • Peptides / pharmacology
  • Phenylalanine / chemistry
  • Protein Conformation
  • Solutions

Substances

  • Amino Acids
  • Anti-Bacterial Agents
  • Antimicrobial Cationic Peptides
  • Biological Products
  • Oligopeptides
  • Peptaibols
  • Peptides
  • Solutions
  • cephaibol A
  • cephaibol C
  • Phenylalanine
  • Leucine