Evaluation of a cyclopentane-based γ-amino acid for the ability to promote α/γ-peptide secondary structure

J Org Chem. 2013 Dec 20;78(24):12351-61. doi: 10.1021/jo401501g. Epub 2013 Dec 5.

Abstract

We report the asymmetric synthesis of the γ-amino acid (1R,2R)-2-aminomethyl-1-cyclopentane carboxylic acid (AMCP) and an evaluation of this residue's potential to promote secondary structure in α/γ-peptides. Simulated annealing calculations using NMR-derived distance restraints obtained for α/γ-peptides in chloroform reveal that AMCP-containing oligomers are conformationally flexible. However, additional evidence suggests that an internally hydrogen-bonded helical conformation is partially populated in solution. From these data, we propose characteristic NOE patterns for the formation of the α/γ-peptide 12/10-helix and discuss the apparent conformational frustration of AMCP-containing oligomers.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acids / chemical synthesis
  • Amino Acids / chemistry*
  • Cyclopentanes / chemistry*
  • Magnetic Resonance Spectroscopy
  • Molecular Structure
  • Peptides / chemistry*

Substances

  • Amino Acids
  • Cyclopentanes
  • Peptides