Identification of immunity-related genes in Ostrinia furnacalis against entomopathogenic fungi by RNA-seq analysis

PLoS One. 2014 Jan 17;9(1):e86436. doi: 10.1371/journal.pone.0086436. eCollection 2014.

Abstract

Background: The Asian corn borer (Ostrinia furnacalis (Guenée)) is one of the most serious corn pests in Asia. Control of this pest with entomopathogenic fungus Beauveria bassiana has been proposed. However, the molecular mechanisms involved in the interactions between O. furnacalis and B. bassiana are unclear, especially under the conditions that the genomic information of O. furnacalis is currently unavailable. So we sequenced and characterized the transcriptome of O. furnacalis larvae infected by B. bassiana with special emphasis on immunity-related genes.

Methodology/principal findings: Illumina Hiseq2000 was used to sequence 4.64 and 4.72 Gb of the transcriptome from water-injected and B. bassiana-injected O. furnacalis larvae, respectively. De novo assembly generated 62,382 unigenes with mean length of 729 nt. All unigenes were searched against Nt, Nr, Swiss-Prot, COG, and KEGG databases for annotations using BLASTN or BLASTX algorithm with an E-value cut-off of 10(-5). A total of 35,700 (57.2%) unigenes were annotated to at least one database. Pairwise comparisons resulted in 13,890 differentially expressed genes, with 5,843 up-regulated and 8,047 down-regulated. Based on sequence similarity to homologs known to participate in immune responses, we totally identified 190 potential immunity-related unigenes. They encode 45 pattern recognition proteins, 33 modulation proteins involved in the prophenoloxidase activation cascade, 46 signal transduction molecules, and 66 immune responsive effectors, respectively. The obtained transcriptome contains putative orthologs for nearly all components of the Toll, Imd, and JAK/STAT pathways. We randomly selected 24 immunity-related unigenes and investigated their expression profiles using quantitative RT-PCR assay. The results revealed variant expression patterns in response to the infection of B. bassiana.

Conclusions/significance: This study provides the comprehensive sequence resource and expression profiles of the immunity-related genes of O. furnacalis. The obtained data gives an insight into better understanding the molecular mechanisms of innate immune processes in O. furnacalis larvae against B. bassiana.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Beauveria / physiology*
  • Gene Expression Profiling
  • Gene Expression Regulation
  • Gene Ontology
  • Genes, Insect / genetics*
  • Immunity / genetics*
  • Insect Proteins / chemistry
  • Insect Proteins / genetics
  • Lepidoptera / genetics*
  • Lepidoptera / immunology*
  • Lepidoptera / microbiology
  • Molecular Sequence Annotation
  • Molecular Sequence Data
  • Peptidoglycan / metabolism
  • Phylogeny
  • Protein Structure, Tertiary
  • Reproducibility of Results
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Alignment
  • Sequence Analysis, RNA / methods*
  • Transcriptome

Substances

  • Insect Proteins
  • Peptidoglycan

Grants and funding

This work was supported by the 973 Program (2013CB114102 and 2013CB127603), National Natural Science Foundation of China (31172090, to C.A. and 31201578, to Y.L.), and Program for New Century Excellent Talents in University (NCET-11-0476, to C.A.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.