Chimeric proton-pumping rhodopsins containing the cytoplasmic loop of bovine rhodopsin

PLoS One. 2014 Mar 12;9(3):e91323. doi: 10.1371/journal.pone.0091323. eCollection 2014.

Abstract

G-protein-coupled receptors (GPCRs) transmit stimuli to intracellular signaling systems. Rhodopsin (Rh), which is a prototypical GPCR, possesses an 11-cis retinal. Photoisomerization of 11-cis to all-trans leads to structural changes in the protein of cytoplasmic loops, activating G-protein. Microbial rhodopsins are similar heptahelical membrane proteins that function as bacterial sensors, light-driven ion-pumps, or light-gated channels. They possess an all-trans retinal, and photoisomerization to 13-cis triggers structural changes in protein. Despite these similarities, there is no sequence homology between visual and microbial rhodopsins, and microbial rhodopsins do not activate G-proteins. In this study, new chimeric proton-pumping rhodopsins, proteorhodopsin (PR) and Gloeobacter rhodopsin (GR) were designed by replacing cytoplasmic loops with bovine Rh loops. Although G-protein was not activated by the PR chimeras, all 12 GR chimeras activated G-protein. The GR chimera containing the second cytoplasmic loop of bovine Rh did not activate G-protein. However, the chimera with a second and third double-loop further enhanced G-protein activation. Introduction of an E132Q mutation slowed the photocycle 30-fold and enhanced activation. The highest catalytic activity of the GR chimera was still 3,200 times lower than bovine Rh but only 64 times lower than amphioxus Go-rhodopsin. This GR chimera showed a strong absorption change of the amide-I band on a light-minus-dark difference FTIR spectrum which could represent a larger helical opening, important for G-protein activation. The light-dependent catalytic activity of this GR chimera makes it a potential optogenetic tool for enzymatic activation by light.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Absorption, Radiation
  • Amino Acid Sequence
  • Animals
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Cattle
  • Cyanobacteria
  • Cytoplasm*
  • Molecular Sequence Data
  • Photochemical Processes
  • Protein Engineering*
  • Proton Pumps / chemistry
  • Proton Pumps / genetics
  • Proton Pumps / metabolism*
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism*
  • Rhodopsin / chemistry
  • Rhodopsin / genetics
  • Rhodopsin / metabolism*
  • Rhodopsins, Microbial

Substances

  • Bacterial Proteins
  • Proton Pumps
  • Recombinant Fusion Proteins
  • Rhodopsins, Microbial
  • proteorhodopsin
  • Rhodopsin

Grants and funding

This work was financially supported by grants from the Japanese Ministry of Education, Culture, Sports, Science and Technology to TY (24115509), KI (24115508, 24655009), YS (25251036), and HK (22247024, 25620011). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.