Phylogeny of the clinically relevant species of the emerging fungus Trichoderma and their antifungal susceptibilities

J Clin Microbiol. 2014 Jun;52(6):2112-25. doi: 10.1128/JCM.00429-14. Epub 2014 Apr 9.

Abstract

A set of 73 isolates of the emerging fungus Trichoderma isolated from human and animal clinical specimens were characterized morphologically and molecularly using a multilocus sequence analysis that included the internal transcribed spacer (ITS) regions of the nuclear ribosomal DNA and fragments of the translation elongation factor 1 alpha (Tef1), endochitinase CHI18-5 (Chi18-5), and actin 1 (Act1) genes. The most frequent species was Trichoderma longibrachiatum (26%), followed by Trichoderma citrinoviride (18%), the Hypocrea lixii/Trichoderma harzianum species complex (15%), the newly described species Trichoderma bissettii (12%), and Trichoderma orientale (11%). The most common anatomical sites of isolation in human clinical specimens were the respiratory tract (40%), followed by deep tissue (30%) and superficial tissues (26%), while all the animal-associated isolates were obtained from superficial tissue samples. Susceptibilities of the isolates to eight antifungal drugs in vitro showed mostly high MICs, except for voriconazole and the echinocandins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actins / genetics
  • Animals
  • Antifungal Agents / pharmacology*
  • Chitinases / genetics
  • Cluster Analysis
  • Communicable Diseases, Emerging / microbiology*
  • DNA, Fungal / chemistry
  • DNA, Fungal / genetics
  • DNA, Ribosomal Spacer / chemistry
  • DNA, Ribosomal Spacer / genetics
  • Humans
  • Microbial Sensitivity Tests
  • Molecular Sequence Data
  • Multilocus Sequence Typing
  • Mycoses / microbiology*
  • Mycoses / veterinary*
  • Peptide Elongation Factor 1 / genetics
  • Phylogeny*
  • Trichoderma / classification*
  • Trichoderma / drug effects*
  • Trichoderma / genetics
  • Trichoderma / isolation & purification

Substances

  • Actins
  • Antifungal Agents
  • DNA, Fungal
  • DNA, Ribosomal Spacer
  • Peptide Elongation Factor 1
  • Chitinases

Associated data

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