Widespread occurrence of expressed fungal secretory peroxidases in forest soils

PLoS One. 2014 Apr 24;9(4):e95557. doi: 10.1371/journal.pone.0095557. eCollection 2014.

Abstract

Fungal secretory peroxidases mediate fundamental ecological functions in the conversion and degradation of plant biomass. Many of these enzymes have strong oxidizing activities towards aromatic compounds and are involved in the degradation of plant cell wall (lignin) and humus. They comprise three major groups: class II peroxidases (including lignin peroxidase, manganese peroxidase, versatile peroxidase and generic peroxidase), dye-decolorizing peroxidases, and heme-thiolate peroxidases (e.g. unspecific/aromatic peroxygenase, chloroperoxidase). Here, we have repeatedly observed a widespread expression of all major peroxidase groups in leaf and needle litter across a range of forest ecosystems (e.g. Fagus, Picea, Acer, Quercus, and Populus spp.), which are widespread in Europe and North America. Manganese peroxidases and unspecific peroxygenases were found expressed in all nine investigated forest sites, and dye-decolorizing peroxidases were observed in five of the nine sites, thereby indicating biological significance of these enzymes for fungal physiology and ecosystem processes. Transcripts of selected secretory peroxidase genes were also analyzed in pure cultures of several litter-decomposing species and other fungi. Using this information, we were able to match, in environmental litter samples, two manganese peroxidase sequences to Mycena galopus and Mycena epipterygia and one unspecific peroxygenase transcript to Mycena galopus, suggesting an important role of this litter- and coarse woody debris-dwelling genus in the disintegration and transformation of litter aromatics and organic matter formation.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Basidiomycota / enzymology*
  • Forests
  • Fungal Proteins / genetics
  • Fungal Proteins / metabolism*
  • Molecular Sequence Data
  • Peroxidases / genetics
  • Peroxidases / metabolism*
  • Phylogeny
  • Sequence Analysis, DNA
  • Soil Microbiology*

Substances

  • Fungal Proteins
  • Peroxidases
  • lignin peroxidase
  • manganese peroxidase

Grants and funding

The work has been funded by the Deutsche Forschungsgemeinschaft - DFG Priority Program 1374 “Infrastructure-Biodiversity-Exploratories” (HO 1961/4-1, KR 3587/1-1), Gembloux Agro-Bio Tech and Fonds de la Recherche Scientific - FNRS (Grant No 2.4503.08), French Research Foundation (EC2CO program MicrobiEn 2009 and project ANR-06-BDIV- 006 Fundiv), US National Science Foundation's Long-Term Research in Environmental Biology program and the US Department of Energy's Biological and Environmental Research Division, and European Union integrated project “Peroxicats” (KBBE-2010-4-265397). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.