Interaction in the indole···imidazole heterodimer: structure, Franck-Condon analysis and energy decomposition

Phys Chem Chem Phys. 2014 Jun 21;16(23):11754-62. doi: 10.1039/c4cp01360c.

Abstract

The complex of indole and imidazole has been studied using a combination of theoretical chemistry techniques, with the relevant calculations compared to existing experimental resonant two-photon ionisation data. Results of fitted multidimensional Franck-Condon simulations based on ground and excited state geometry optimizations and harmonic vibrational frequencies confirm that the V-shaped herringbone structure is that observed by experiment. The ground state interaction energy of these important biomolecular building blocks has been evaluated at a benchmark quality level using explicitly correlated coupled cluster theory, and the V-shaped structure is shown to be approximately 2 kcal mol(-1) more strongly bound than other possible conformers. The non-covalent interaction energy is decomposed into physical components using symmetry-adapted perturbation theory and it can be seen that although electrostatics dominate the interaction, dispersion plays a vital role in determining the optimal geometry.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Dimerization
  • Imidazoles / chemistry*
  • Indoles / chemistry*
  • Molecular Structure
  • Quantum Theory*

Substances

  • Imidazoles
  • Indoles
  • imidazole
  • indole