Analysis of small RNAs derived from Chinese wheat mosaic virus

Arch Virol. 2014 Nov;159(11):3077-82. doi: 10.1007/s00705-014-2155-7. Epub 2014 Jul 6.

Abstract

The virus-derived small interfering RNAs (vsiRNAs) of Chinese wheat mosaic virus (CWMV), a member of the genus Furovirus, were characterised from wheat plants by deep sequencing. CWMV vsiRNAs of 21-22 nt in length predominated, suggesting that there might be a conserved mechanism of DCL2 and DCL4 involvement in the biogenesis of vsiRNAs, as well as a common RNA silencing pathway in CWMV-infected wheat plants. The 5'-terminal base of vsiRNAs was biased towards A/U, suggesting that CWMV vsiRNAs might be loaded into diverse AGO-containing RISCs to disturb the gene expression of host plants. Possible targets for some of the vsiRNAs were predicted.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Plant Diseases / genetics
  • Plant Diseases / virology*
  • RNA Viruses / genetics*
  • RNA Viruses / isolation & purification
  • RNA, Small Interfering / genetics*
  • RNA, Viral / genetics*
  • Sequence Analysis, RNA
  • Triticum / genetics
  • Triticum / virology*

Substances

  • RNA, Small Interfering
  • RNA, Viral