Alternative forms of Y-box binding protein 1 and YB-1 mRNA

PLoS One. 2014 Aug 12;9(8):e104513. doi: 10.1371/journal.pone.0104513. eCollection 2014.

Abstract

The multifunctional eukaryotic protein YB-1 (Y-box binding protein 1) plays a role in DNA reparation, transcription regulation, splicing, and mRNA translation, thereby participating in many crucial events in cells. Its effect is dependent mostly on its amount, and hence, on regulation of its synthesis. Published data on regulation of synthesis of YB-1 mediated by its mRNA 5' UTR, and specifically on the 5' UTR length and the presence of TOP-like motifs in this region, are contradictory. Here we report that 5' UTRs of major forms of human, rabbit, and mouse YB-1 mRNAs are about 140 nucleotides long and contain no TOP-like motifs mentioned in the literature. Also, we have found that YB-1 specifically interacts with the 5' UTR of its own mRNA within a region of about 100 nucleotides upstream from the start codon. Apart from YB-1, translation of YB-1 mRNA in a cell free system gives an additional product with an extended N-terminus and lower electrophoretic mobility. The start codon for synthesis of the additional product is AUC at position -(60-58) of the same open reading frame as that for the major product. Also, in the cell there is an alternative YB-1 mRNA with exon 1 replaced by a part of intron 1; YB-1 synthesized in vitro from this mRNA contains, instead of its N-terminal A/P domain, 10-11 amino acids encoded by intron 1.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions
  • Alternative Splicing*
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Binding Sites
  • HEK293 Cells
  • Humans
  • MCF-7 Cells
  • Mice
  • Molecular Sequence Data
  • NIH 3T3 Cells
  • Protein Binding
  • Protein Biosynthesis
  • RNA, Messenger / chemistry
  • RNA, Messenger / genetics
  • Rabbits
  • Y-Box-Binding Protein 1 / chemistry
  • Y-Box-Binding Protein 1 / genetics*
  • Y-Box-Binding Protein 1 / metabolism

Substances

  • 5' Untranslated Regions
  • RNA, Messenger
  • Y-Box-Binding Protein 1

Grants and funding

This work was supported by Programs on “Molecular and Cell Biology” and “Basic Sciences to Medicine” of the Russian Academy of Sciences, Russian Foundation for Basic Research [# 14-04-01838, # 14-04-00027, # 14-04-31517]. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.