Paradevosia shaoguanensis gen. nov., sp. nov., isolated from a coking wastewater

Curr Microbiol. 2015 Jan;70(1):110-8. doi: 10.1007/s00284-014-0689-2. Epub 2014 Sep 19.

Abstract

A Gram staining negative, rod-shaped, aerobic bacterial strain J5-3(T) with a single polar flagellum was isolated from coking wastewater collected from Shaoguan, Guangdong, China. It was motile and capable of optimal growth at pH 6-8, 30 °C, and 0-2 % (w/v) NaCl. Its predominant fatty acids were 11-methyl C18:1 ω7c (29.2 %), C16:0 (20.6 %), C19:0 cyclo ω8c (18.2 %), C18:0 (11.0 %), and C18:1 ω7c/C18:1 ω6c (10.9 %) when grown on trypticase soy agar. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, two unknown glycolipids (GL1, GL2), and two unknown phospholipid (PL1, PL2). The predominant ubiquinone was Q-10, and the genome DNA G+C content was 61.7 mol %. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that strain J5-3(T) belonged to the family Hyphomicrobiaceae in Alphaproteobacteria. It shared the 16S rRNA gene sequence similarities of 93.8-96.1 % with the genus Devosia, 94.5-94.8 % with the genus Pelagibacterium, and <92.0 % with all the other type strains in family Hyphomicrobiaceae. It can be distinguished from the closest phylogenetic neighbors based on several phenotypic and genotypic features, including α-galactosidase activity, tetracycline susceptibility, major fatty acid composition, polar lipid profile, DNA gyrase B subunit (gyrB) gene sequence, and random-amplified polymorphic DNA profile. Therefore, we consider strain J5-3(T) to represent a novel species of a novel genus within the family Hyphomicrobiaceae, for which the name Paradevosia shaoguanensis gen. nov., sp. nov. is proposed. The type strain of Paradevosia shaoguanensis is J5-3(T) (=CGMCC 1.12430(T) =LMG 27409(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Composition
  • China
  • DNA, Bacterial / genetics
  • Fatty Acids / metabolism
  • Hyphomicrobiaceae / classification
  • Hyphomicrobiaceae / genetics
  • Hyphomicrobiaceae / isolation & purification*
  • Hyphomicrobiaceae / metabolism
  • Industrial Waste / analysis*
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Wastewater / microbiology*

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Industrial Waste
  • RNA, Ribosomal, 16S
  • Waste Water

Associated data

  • GENBANK/KC222641
  • GENBANK/KJ941045
  • GENBANK/KJ941046
  • GENBANK/KJ941047
  • GENBANK/KJ941048
  • GENBANK/KJ941049