A γ-amino acid that favors 12/10-helical secondary structure in α/γ-peptides

J Am Chem Soc. 2014 Oct 22;136(42):15046-53. doi: 10.1021/ja5076585. Epub 2014 Oct 10.

Abstract

H-bonded helices in conventional peptides (containing exclusively homochiral α-amino acid residues) feature a uniform H-bonding directionality, N-terminal side C═O to C-terminal side NH. In contrast, heterochiral α-peptides can form helices in which the H-bond directionality alternates along the backbone because neighboring amide groups are oriented in opposite directions. Alternating H-bond directions are seen also in helices formed by unnatural peptidic backbones, e.g., those containing β- or γ-amino acid residues. In the present study, we used NMR spectroscopy and crystallography to evaluate the conformational preferences of the novel γ-amino acid (1R,2R,3S)-2-(1-aminopropyl)-cyclohexanecarboxylic acid (APCH), which is constrained by a six-membered ring across its Cα-Cβ bond. These studies were made possible by the development of a stereoselective synthesis of N-protected APCH. APCH strongly enforces the α/γ-peptide 12/10-helical secondary structure, which features alternating H-bond directionality. Thus, APCH residues appear to have a conformational propensity distinct from those of other cyclically constrained γ-amino acid residues.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acids / chemistry*
  • Cyclohexanecarboxylic Acids / chemistry
  • Hydrogen Bonding
  • Models, Molecular
  • Peptides / chemistry*
  • Protein Structure, Secondary

Substances

  • Amino Acids
  • Cyclohexanecarboxylic Acids
  • Peptides
  • cyclohexanecarboxylic acid