Synthesis, molecular docking and biological evaluation of coumarin derivatives containing piperazine skeleton as potential antibacterial agents

Bioorg Med Chem. 2014 Nov 1;22(21):5727-37. doi: 10.1016/j.bmc.2014.09.048. Epub 2014 Sep 30.

Abstract

A series of 4-hydroxycoumarin derivatives were designed and synthesized in order to find some more potent antibacterial drugs. Their antibacterial activities against Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis and Staphylococcus aureus were tested. These compounds showed good antibacterial activities against Gram-positive strains. Compound 4 g represented the most potent antibacterial activity against Bacillus subtilis and S. aureus with MIC of 0.236, 0.355 μg/mL, respectively. What's more, it showed the most potent activity against SaFabI with IC50 of 0.57 μM. Molecular docking of 4 g into S. aureus Enoyl-ACP-reductase active site were performed to determine the probable binding mode, while the QSAR model was built to check the previous work as well as to introduce new directions.

Keywords: 3D-QSAR; Antibacterial activities; Coumarin derivatives; Molecular docking; SaFabI.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / chemical synthesis*
  • Anti-Bacterial Agents / pharmacology*
  • Anti-Bacterial Agents / toxicity
  • Bacillus subtilis / drug effects
  • Bacteria / drug effects*
  • Binding Sites
  • Catalytic Domain
  • Coumarins / chemistry*
  • Coumarins / metabolism
  • Coumarins / pharmacology*
  • Enoyl-(Acyl-Carrier-Protein) Reductase (NADH) / chemistry
  • Enoyl-(Acyl-Carrier-Protein) Reductase (NADH) / metabolism
  • Erythrocytes / cytology
  • Erythrocytes / drug effects
  • Escherichia coli / drug effects
  • Hemolysis / drug effects
  • Humans
  • Microbial Sensitivity Tests
  • Molecular Docking Simulation
  • Piperazine
  • Piperazines / chemistry*
  • Protein Binding
  • Pseudomonas aeruginosa / drug effects
  • Quantitative Structure-Activity Relationship
  • Staphylococcus aureus / drug effects
  • Staphylococcus aureus / enzymology

Substances

  • Anti-Bacterial Agents
  • Coumarins
  • Piperazines
  • Piperazine
  • Enoyl-(Acyl-Carrier-Protein) Reductase (NADH)