This article explores an important property of the intrinsic estimator that has received no attention in literature: the age, period, and cohort estimates of the intrinsic estimator are not unique but vary with the parameterization and reference categories chosen for these variables. We give a formal proof of the non-uniqueness property for effect coding and dummy variable coding. Using data on female mortality in the United States over the years 1960-1999, we show that the variation in the results obtained for different parameterizations and reference categories is substantial and leads to contradictory conclusions. We conclude that the non-uniqueness property is a new argument for not routinely applying the intrinsic estimator.