Global transcriptome and chromatin occupancy analysis reveal the short isoform of GATA1 is deficient for erythroid specification and gene expression

Haematologica. 2015 May;100(5):575-84. doi: 10.3324/haematol.2014.112714. Epub 2015 Feb 14.

Abstract

GATA1 is a master transcriptional regulator of the differentiation of several related myeloid blood cell types, including erythrocytes and megakaryocytes. Germ-line mutations that cause loss of full length GATA1, but allow for expression of the short isoform (GATA1s), are associated with defective erythropoiesis in a subset of patients with Diamond Blackfan Anemia. Despite extensive studies of GATA1s in megakaryopoiesis, the mechanism by which GATA1s fails to support normal erythropoiesis is not understood. In this study, we used global gene expression and chromatin occupancy analysis to compare the transcriptional activity of GATA1s to GATA1. We discovered that compared to GATA1, GATA1s is less able to activate the erythroid gene expression program and terminal differentiation in cells with dual erythroid-megakaryocytic differentiation potential. Moreover, we found that GATA1s bound to many of its erythroid-specific target genes less efficiently than full length GATA1. These results suggest that the impaired ability of GATA1s to promote erythropoiesis in DBA may be caused by failure to occupy erythroid-specific gene regulatory elements.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Cell Differentiation / genetics
  • Cell Line
  • Chromatin Immunoprecipitation*
  • Cluster Analysis
  • Erythroid Cells / cytology
  • Erythroid Cells / metabolism*
  • Erythropoiesis / genetics
  • GATA1 Transcription Factor / genetics*
  • GATA1 Transcription Factor / metabolism
  • Gene Expression Profiling
  • Gene Expression Regulation*
  • Humans
  • Megakaryocytes / cytology
  • Megakaryocytes / metabolism
  • Nucleotide Motifs
  • Protein Binding
  • RNA Isoforms*
  • Thrombopoiesis / genetics
  • Transcriptome*

Substances

  • GATA1 Transcription Factor
  • RNA Isoforms