X-ray and Cryo-EM structures reveal mutual conformational changes of Kinesin and GTP-state microtubules upon binding

EMBO J. 2015 May 5;34(9):1270-86. doi: 10.15252/embj.201490588. Epub 2015 Mar 16.

Abstract

The molecular motor kinesin moves along microtubules using energy from ATP hydrolysis in an initial step coupled with ADP release. In neurons, kinesin-1/KIF5C preferentially binds to the GTP-state microtubules over GDP-state microtubules to selectively enter an axon among many processes; however, because the atomic structure of nucleotide-free KIF5C is unavailable, its molecular mechanism remains unresolved. Here, the crystal structure of nucleotide-free KIF5C and the cryo-electron microscopic structure of nucleotide-free KIF5C complexed with the GTP-state microtubule are presented. The structures illustrate mutual conformational changes induced by interaction between the GTP-state microtubule and KIF5C. KIF5C acquires the 'rigor conformation', where mobile switches I and II are stabilized through L11 and the initial portion of the neck-linker, facilitating effective ADP release and the weak-to-strong transition of KIF5C microtubule affinity. Conformational changes to tubulin strengthen the longitudinal contacts of the GTP-state microtubule in a similar manner to GDP-taxol microtubules. These results and functional analyses provide the molecular mechanism of the preferential binding of KIF5C to GTP-state microtubules.

Keywords: X‐ray crystallography; cryo‐electron microscopy; kinesin; microtubule; polarized transport in neuron.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Diphosphate / metabolism
  • Amino Acid Sequence
  • Animals
  • Binding Sites
  • Cryoelectron Microscopy / methods
  • Crystallography, X-Ray
  • Guanosine Triphosphate / analogs & derivatives
  • Guanosine Triphosphate / chemistry
  • Guanosine Triphosphate / metabolism
  • Kinesins / chemistry*
  • Kinesins / genetics
  • Kinesins / metabolism*
  • Mice
  • Microtubules / chemistry*
  • Microtubules / metabolism*
  • Microtubules / ultrastructure
  • Models, Molecular
  • Molecular Docking Simulation
  • Molecular Sequence Data
  • Protein Conformation

Substances

  • 5'-guanylylmethylenebisphosphonate
  • Adenosine Diphosphate
  • Guanosine Triphosphate
  • KIF5C protein, mouse
  • Kinesins

Associated data

  • PDB/3J7I
  • PDB/3WRD
  • PDB/3X2T