Perspective on computational and structural aspects of kinase discovery from IPK2014

Biochim Biophys Acta. 2015 Oct;1854(10 Pt B):1595-604. doi: 10.1016/j.bbapap.2015.03.014. Epub 2015 Apr 7.

Abstract

Recent advances in understanding the activity and selectivity of kinase inhibitors and their relationships to protein structure are presented. Conformational selection in kinases is studied from empirical, data-driven and simulation approaches. Ligand binding and its affinity are, in many cases, determined by the predetermined active and inactive conformation of kinases. Binding affinity and selectivity predictions highlight the current state of the art and advances in computational chemistry as it applies to kinase inhibitor discovery. Kinome wide inhibitor profiling and cell panel profiling lead to a better understanding of selectivity and allow for target validation and patient tailoring hypotheses. This article is part of a Special Issue entitled: Inhibitors of Protein Kinases.

Keywords: Cancer cell panel profiling; Conformational selection; DFG in–out transition; Kinase inhibition profile; Kinase inhibitor.

Publication types

  • Review

MeSH terms

  • Amino Acid Sequence / genetics
  • Binding Sites
  • CSK Tyrosine-Protein Kinase
  • Computational Biology
  • Humans
  • Protein Binding
  • Protein Conformation
  • Protein Kinase Inhibitors / chemistry
  • Protein Kinases / chemistry*
  • Protein Kinases / genetics*
  • Protein Kinases / metabolism
  • Proto-Oncogene Proteins c-abl / chemistry
  • Proto-Oncogene Proteins c-abl / genetics*
  • src-Family Kinases / chemistry
  • src-Family Kinases / genetics*

Substances

  • Protein Kinase Inhibitors
  • Protein Kinases
  • CSK Tyrosine-Protein Kinase
  • Proto-Oncogene Proteins c-abl
  • src-Family Kinases
  • CSK protein, human