Olfactomedin-1 Has a V-shaped Disulfide-linked Tetrameric Structure

J Biol Chem. 2015 Jun 12;290(24):15092-101. doi: 10.1074/jbc.M115.653485. Epub 2015 Apr 21.

Abstract

Olfactomedin-1 (Olfm1; also known as noelin and pancortin) is a member of the olfactomedin domain-containing superfamily and a highly expressed neuronal glycoprotein important for nervous system development. It binds a number of secreted proteins and cell surface-bound receptors to induce cell signaling processes. Using a combined approach of x-ray crystallography, solution scattering, analytical ultracentrifugation, and electron microscopy we determined that full-length Olfm1 forms disulfide-linked tetramers with a distinctive V-shaped architecture. The base of the "V" is formed by two disulfide-linked dimeric N-terminal domains. Each of the two V legs consists of a parallel dimeric disulfide-linked coiled coil with a C-terminal β-propeller dimer at the tips. This agrees with our crystal structure of a C-terminal coiled-coil segment and β-propeller combination (Olfm1(coil-Olf)) that reveals a disulfide-linked dimeric arrangement with the β-propeller top faces in an outward exposed orientation. Similar to its family member myocilin, Olfm1 is stabilized by calcium. The dimer-of-dimers architecture suggests a role for Olfm1 in clustering receptors to regulate signaling and sheds light on the conformation of several other olfactomedin domain family members.

Keywords: analytical ultracentrifugation; cell signaling; coiled coil; development; disulfide; electron tomography; neurobiology; olfactomedin-1 (Olfm1); small angle x-ray scattering (SAXS); x-ray crystallography.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Crystallography, X-Ray
  • Extracellular Matrix Proteins / chemistry*
  • Extracellular Matrix Proteins / metabolism
  • Glycoproteins / chemistry*
  • Glycoproteins / metabolism
  • HEK293 Cells
  • Humans
  • Mice
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Binding
  • Protein Structure, Quaternary
  • Sequence Homology, Amino Acid

Substances

  • Extracellular Matrix Proteins
  • Glycoproteins
  • olfactomedin

Associated data

  • PDB/2DFS
  • PDB/4D77
  • PDB/5AFB
  • PDB/5AMO