Polymerase Bypass of N(6)-Deoxyadenosine Adducts Derived from Epoxide Metabolites of 1,3-Butadiene

Chem Res Toxicol. 2015 Jul 20;28(7):1496-507. doi: 10.1021/acs.chemrestox.5b00166. Epub 2015 Jul 6.

Abstract

N(6)-(2-Hydroxy-3-buten-1-yl)-2'-deoxyadenosine (N(6)-HB-dA I) and N(6),N(6)-(2,3-dihydroxybutan-1,4-diyl)-2'-deoxyadenosine (N(6),N(6)-DHB-dA) are exocyclic DNA adducts formed upon alkylation of the N(6) position of adenine in DNA by epoxide metabolites of 1,3-butadiene (BD), a common industrial and environmental chemical classified as a human and animal carcinogen. Since the N(6)-H atom of adenine is required for Watson-Crick hydrogen bonding with thymine, N(6)-alkylation can prevent adenine from normal pairing with thymine, potentially compromising the accuracy of DNA replication. To evaluate the ability of BD-derived N(6)-alkyladenine lesions to induce mutations, synthetic oligodeoxynucleotides containing site-specific (S)-N(6)-HB-dA I and (R,R)-N(6),N(6)-DHB-dA adducts were subjected to in vitro translesion synthesis in the presence of human DNA polymerases β, η, ι, and κ. While (S)-N(6)-HB-dA I was readily bypassed by all four enzymes, only polymerases η and κ were able to carry out DNA synthesis past (R,R)-N(6),N(6)-DHB-dA. Steady-state kinetic analyses indicated that all four DNA polymerases preferentially incorporated the correct base (T) opposite (S)-N(6)-HB-dA I. In contrast, hPol β was completely blocked by (R,R)-N(6),N(6)-DHB-dA, while hPol η and κ inserted A, G, C, or T opposite the adduct with similar frequency. HPLC-ESI-MS/MS analysis of primer extension products confirmed that while translesion synthesis past (S)-N(6)-HB-dA I was mostly error-free, replication of DNA containing (R,R)-N(6),N(6)-DHB-dA induced significant numbers of A, C, and G insertions and small deletions. These results indicate that singly substituted (S)-N(6)-HB-dA I lesions are not miscoding, but that exocyclic (R,R)-N(6),N(6)-DHB-dA adducts are strongly mispairing, probably due to their inability to form stable Watson-Crick pairs with dT.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Butadienes / chemistry
  • Butadienes / metabolism*
  • Chromatography, High Pressure Liquid
  • DNA / analysis
  • DNA / metabolism
  • DNA Adducts / chemistry
  • DNA Adducts / metabolism*
  • DNA Primers / metabolism
  • DNA Replication
  • DNA-Directed DNA Polymerase / metabolism*
  • Deoxyadenosines / chemistry
  • Deoxyadenosines / metabolism*
  • Epoxy Compounds / chemistry
  • Humans
  • Kinetics
  • Oligodeoxyribonucleotides / chemical synthesis
  • Oligodeoxyribonucleotides / chemistry
  • Oligodeoxyribonucleotides / metabolism
  • Spectrometry, Mass, Electrospray Ionization

Substances

  • Butadienes
  • DNA Adducts
  • DNA Primers
  • Deoxyadenosines
  • Epoxy Compounds
  • N6-(2-hydroxy-3-buten-1-yl)-2'-deoxyadenosine
  • Oligodeoxyribonucleotides
  • DNA
  • DNA-Directed DNA Polymerase
  • 1,3-butadiene