Saccharomyces cerevisiae lysophospholipid acyltransferase, Lpt1, requires Asp146 and Glu297 for catalysis

J Lipid Res. 2015 Nov;56(11):2143-50. doi: 10.1194/jlr.M062141. Epub 2015 Sep 17.

Abstract

The esterification of lysophospholipids contributes to phospholipid synthesis, remodeling, and scavenging. Acyl-CoA-dependent lysophospholipid acyltransferase activity with broad substrate use is mediated by Saccharomyces cerevisiae Lpt1p. We sought to identify Lpt1p active site amino acids besides the histidine conserved among homologs and repeatedly found to be required for catalysis. In vitro Lpt1p assays with amino acid modifying agents implicated aspartate, glutamate, and lysine as active site residues. Threonine and tyrosine were not ruled out. Aligning the primary structures of functionally characterized LPT1 homologs from fungi, plants, and animals identified 11 conserved aspartate, glutamate, lysine, threonine, and tyrosine residues. Site-directed mutagenesis of the respective codons showed that changing D146 and E297 abolished activity without abolishing protein expression. The mechanism of Lpt1p was further analyzed using monounsaturated acyl-CoA species with different double bond positions. Delta 6 species showed the highest catalytic efficiency. We propose that D146 and E297 act in conjunction with H382 as nucleophiles that attack the hydroxyl group in lysophospholipids in a general acid/base mechanism. This sequential mechanism provides a precedent for other members of the membrane bound O-acyltransferase family. Also, Lpt1p optimally orients acyl-CoA substrates with 7.5 Å between a double bond and the thioester bond.

Keywords: active site; acyl-CoA diacylglycerol acyltransferase; enzymology/enzyme mechanisms; fatty acid/transferase; membrane bound O-acyltransferase; phospholipids/biosynthesis; phospholipids/metabolism; reaction mechanism.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 1-Acylglycerophosphocholine O-Acyltransferase / chemistry*
  • 1-Acylglycerophosphocholine O-Acyltransferase / physiology
  • Acyl Coenzyme A / chemistry
  • Amino Acid Sequence
  • Aspartic Acid
  • Biocatalysis
  • Conserved Sequence
  • Glutamic Acid
  • Kinetics
  • Lysophospholipids / chemistry
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Saccharomyces cerevisiae / enzymology*
  • Saccharomyces cerevisiae Proteins / chemistry*
  • Saccharomyces cerevisiae Proteins / physiology

Substances

  • Acyl Coenzyme A
  • Lysophospholipids
  • Saccharomyces cerevisiae Proteins
  • Aspartic Acid
  • Glutamic Acid
  • 1-Acylglycerophosphocholine O-Acyltransferase
  • ALE1 protein, S cerevisiae